Bioconductor GO enrichment

Showing : GO enrichment • reset

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5.2k

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clusterProfiler GO GO enrichment genesetenrichment

updated 20 months ago by jandrade • 0 • written 8.0 years ago by Huang, Lei [BSD] - CRI ▴ 20

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2.9k

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go enrichment gene ontology goseq go

6.2 years ago Raito92 ▴ 60

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1.5k

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gosemsim go enrichment go semantic similarity

7.0 years ago nooshin ▴ 300

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2.7k

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rnaseq topgo go enrichment

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by jgg • 0

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3.7k

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clusterprofiler go enrichment functional enrichment

updated 7.1 years ago by Guangchuang Yu ★ 1.2k • written 7.1 years ago by Jack ▴ 20

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1.7k

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topgo ks score kolmogorov-smirnov test go enrichment

updated 7.4 years ago by Lluís Revilla Sancho ▴ 760 • written 7.4 years ago by eagomezc • 0

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1.3k

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goseq go enrichment

7.4 years ago mart1139 • 0

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2.3k

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chipseq go enrichment clusterprofiler

updated 7.7 years ago by Guangchuang Yu ★ 1.2k • written 7.7 years ago by Javier Pérez Florido ▴ 840

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4.5k

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deseq2 goseq rnaseq go enrichment differential gene expression

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by josef.oeckl • 0

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2.9k

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org.dm.eg.db gene ontology go enrichment annotation NOT

updated 8.7 years ago by Valerie Obenchain ★ 6.8k • written 8.7 years ago by triZZla • 0

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1.3k

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go enrichment topgo d.ananassae

updated 9.4 years ago by James W. MacDonald 68k • written 9.4 years ago by koeniger ▴ 10

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2.8k

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bacteria GO enrichment

updated 10.3 years ago by Marc Carlson ★ 7.2k • written 10.3 years ago by ksw ▴ 20

12 results • Page 1 of 1

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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